Jobs with variety of components

In an effort to determine what is causing the time in the chemistry solver to increase about four fold, I'm creating jobs with a variety of components. I'm expanding the list, because I think it's useful to have a variety of job with different components.

JobVersionComponentsComments
Base jobs
u-ae771UM10.5 Mohit's GA7 + StratTrop at UM10.5 About 23 mins for a 10 day cycle on 20 nodes.
u-ae029UM10.4 5PFTs with TRIFFID
u-af508UM10.5 Spencer's 13PFTs + TRIFFID + Phenology + land use + nitrogen limitation + crop/pasture forcing
u-af280UM10.4.1, NEMO3.6 13PFTs + TRIFFID + Phenology + land use (N96-ORCA025)
u-ac926UM10.4, NEMO3.6 Till's GC3 (N96-ORCA1)
u-af082UM10.5, NEMO3.6 Dan's GC3 (N96-ORCA025)
Developments jobs to UKESM0.4
u-af344UM10.4.1, NEMO3.6 13PFTs + TRIFFID + Phenology + land use (N96-ORCA1) Used u-af280 & u-ac926
u-af408UM10.5, NEMO3.6 13PFTs + TRIFFID + Phenology + land use (N96-ORCA1) Used u-af344
u-af544UM10.5, NEMO3.6 13PFTs + TRIFFID + Phenology + land use (N96-ORCA1) Used u-af408, added in vn10.5_ukesm_submit_pkg, GO6 package branch and interactive CO2
u-af755UM10.5, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + MEDUSA (N96-ORCA1) Used u-af544
u-af734UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-af755
u-af826UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-af734, Till's updates to ORCA1 - except iodef.xml
u-af879UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + Dr Hook + MEDUSA (N96-ORCA1) Used u-af826, for profiling. About 134 mins for first month, and 147 mins for second month.
u-af840UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-af826, Yongming has made some changes
u-ag049UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-af840, added monthly sea diagnostics
u-ag050UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag049, added daily sea diagnostics
u-ag107UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag050 & (u-ac972, early version of u-af508), changed STASHmaster_A, added in Spencer & Jane's branches and STASH items 287-289 + 470-473
u-ag115UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag107 & u-af508, added in settings from u-af508, but kept nitrogen limitation & crop/pasture forcing off
u-ag246UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag115 and GMED ticket 275, GC3.1 settings
u-ag430UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag246, every element of crop_io set to zero (all grasses)
u-ag457UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag430, changed settings for TCOUPMN and removed interactive CO2. About 28 mins for a 10 day cycle on 23 nodes.
u-ag708UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag457, changed i_co2_opt: 2->1.
Julien's u-ag770 UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag708, Julien has
  • added the age of tracer
  • changed several parameters
  • linked a lot of the namelist to files in his directories
  • Fix for the NRUN-CRUN test
u-ag905UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag770, Removed MEDUSA from rose-suite.conf and namelist files from file directories - which are now linked to Julien's directories.
Yongming's u-ah955UM10.6, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Yongming has upgraded job to UM10.6
u-ai447UM10.6, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ah955 and the changes for UKESM0.4-CC to update job.
Robin's extra ice tile jobs
u-af898UM10.5, NEMO3.6 13PFTs + 10 extra ice tiles + TRIFFID + Phenology + land use (N96-ORCA1) Used u-af408
Adding components to GA7 + StratTrop
u-ag302UM10.5 GA7 + StratTrop + TRIFFID Used u-ae771 and u-ae029
u-ag334UM10.5 GA7 + StratTrop + TRIFFID + Phenology Used u-ag302
u-ag393UM10.5 GA7 + StratTrop + TRIFFID + Phenology + interactive CO2 Used u-ag334
Adding components to GC3 + StratTrop
u-af760UM10.5, NEMO3.6 GC3 + StratTrop (N96-ORCA025) Used u-af082 & u-ae771. About 29 mins for a 10 day cycle on 20+13 nodes.
u-ag303UM10.5, NEMO3.6 GC3 + StratTrop (N96-ORCA1) Used u-af760 and u-ac926, mean fields have become liney (if I set intv: 3->1 for TCOUPMN this problem goes away). About 32 mins for a 10 day cycle on 23 nodes.
u-ag448UM10.5, NEMO3.6 GC3 + StratTrop (N96-ORCA1) Used u-ag303, debugging, need to set istr & ifre = 3 for TCOUPMN
u-ag388UM10.5, NEMO3.6 GC3 + StratTrop + TRIFFID (N96-ORCA1) Used u-ag303 & TRIFFID settings from u-ag246. About 38 mins for a 10 day cycle on 10 nodes.
u-ag400UM10.5, NEMO3.6 GC3 + StratTrop + TRIFFID (N96-ORCA1) Used u-ag388, adding GO6 package branch
u-ag399UM10.5, NEMO3.6 GC3 + StratTrop + TRIFFID + MEDUSA (N96-ORCA1) Used u-ag400. About 38.5 mins per 10 day cycle on 10 nodes.
u-ag443UM10.5, NEMO3.6 GC3 + StratTrop + TRIFFID + MEDUSA (N96-ORCA1) Used u-ag399, adding interactive CO2. Exceeds hour wallclock in 40-50 day cycle on 10 nodes.
u-ag465UM10.5, NEMO3.6 GC3 + StratTrop + TRIFFID + MEDUSA (N96-ORCA1) Used u-ag399, adding stash items 250 & 252 but not interactive CO2. About 39.5 mins per 10 day cycle on 10 nodes.
u-ag482UM10.5, NEMO3.6 GC3 + StratTrop + TRIFFID + MEDUSA (N96-ORCA1) Used u-ag399, set l_ukca_set_trace_gases to false. Exceeds hour wallclock in 40-50 day cycle on 10 nodes.
u-ag483UM10.5, NEMO3.6 GC3 + StratTrop + MEDUSA (N96-ORCA1) Used u-ag399, checking that removing TRIFFID prevents CO2 coupling. It's run - about 39.5 mins per 10 day cycle on 10 nodes. Looking at set_atm_fields.F90 it appears that CO2flux is always declared now.
u-ag926UM10.5, NEMO3.6 GC3 + StratTrop + TRIFFID + MEDUSA (N96-ORCA1) Used u-ag443, adding fix to MEDUSA code. Exceeds hour wallclock in 40-50 day cycle on 10 nodes.
u-ah369UM10.5, NEMO3.6 GC3 + StratTrop + TRIFFID + MEDUSA (N96-ORCA1) Used u-ag926, ocean CO2 flux fix and setting bdustfer to false. The cycles are not noticeably slowing down now.
Removing components from UKESM0.4
u-af916UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + Dr Hook + MEDUSA (N96-ORCA1) Used u-af879, removed DMS coupling. About 84 mins for first month and 112 mins for second month on 23 nodes.
u-ag389UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + Dr Hook + MEDUSA (N96-ORCA1) Used u-af916, removed all coupling to OBGC, doesn't seem to have the problems in chemistry solver. 98 mins for first month and 97 mins for second month on 23 nodes.
u-ag397UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + Dr Hook + MEDUSA (N96-ORCA1) Used u-af916, removed OBGC->UM coupling. About 30 mins per 10 day cycle on 23 nodes.
u-ag435UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + Dr Hook + MEDUSA (N96-ORCA1) Used u-ag397, all coupling except CO2 flux - so added DMS coupling back in. About 30 mins per 10 day cycle on 23 nodes.
u-ag449UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + Dr Hook + MEDUSA (N96-ORCA1) Used u-af879, removed interactive CO2. About 49.5 mins per 10 day cycle on 23 nodes.
u-ag464UM10.5, NEMO3.6 13PFTs + StratTrop + TRIFFID + Phenology + land use + BVOC + Dr Hook + MEDUSA (N96-ORCA1) Used u-af879, removed interactive CO2 and STASH items 250 & 252. About 51 mins per 10 days, but doesn't look to slow down after first 10 days (on 23 nodes). WHY SO MUCH SLOWER THAN u-ag435?. PRINT_STATUS was set to highest level. When this is set to normal, it runs at about 36 mins per 10 day cycle.
UKESM0.4-CC
Yongming's u-ag838UM10.5, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Started from the one of the jobs above?
u-ag891UM10.5, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag838, with fixes to MEDUSA and removal of DMS ancil update
u-ag892UM10.5, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag891, removed the coupling of DMS conc (replaced with Jane's ancil) and CO2flux
u-ag976UM10.5, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag891, with interactive CO2
u-ag978UM10.5, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag892, with DMS conc ancil zero CO2 flux and interactive CO2
u-ah222UM10.5, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag976, with interactive CO2 and ocean CO2 flux fix
u-ah370UM10.5, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ag891 & u-ag905, taken most of the namelist settings from u-ag905 and added in the fix to ocean CO2 flux
u-ah618UM10.5, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ah370, taking changes from u-ah288, where Julien has moved the MEDUSA namelists into MEDUSA branch
u-ah636UM10.5, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ah618, use the latest version of GO6 package branch Problems with XIOS - I think I'll try upgrade first.
u-ah657UM10.6, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ah618. I had to remove CO2 flux coupling, because CO2flux array was not setup properly in D1
u-ai110UM10.6, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ah657. Adding CO2 flux back in and Yongming's branch
u-ai195UM10.6, NEMO3.6 13PFTs + TRIFFID + Phenology + land use + BVOC + MEDUSA (N96-ORCA1) Used u-ai110. Adding in Julien's rose-meta data, my OpenMP fix branch and changes to UKCA spectral files
GC3.1 N96-ORCA1
u-ai082UM10.6, NEMO3.6 N96-ORCA1 Run on XCS, used Dan's GC3.1 UM10.6, u-ah981, and Till's u-ag895. The changes to Dan's job are described at Swapping ORCA025 for ORCA1 II.
u-ai263UM10.6, NEMO3.6 N96-ORCA1 Used u-ai082 and Dan's GC3.1 job with drivers, u-ah431 to add drivers. Changes are described at Adding drivers. I've gone to add the albedo tunning for Artic ice thickness and my OpenMP fix branch
u-ai737UM10.6, NEMO3.6 N96-ORCA1 Used u-ai263 and a number of small fixes
u-aj659UM10.6, NEMO3.6 N96-ORCA1 Used u-ai737. There have been so many changes to iodef.xml and NEMO CPP keys, I now need a clean job.
u-ak775UM10.6, NEMO3.6 N96-ORCA1 Used u-aj659 but updated ancillaries, navigated around geothermal weights file and changed CICE_INIT to the one use in Malcolm's u-aj855.
u-al035UM10.7, NEMO3.6 N96-ORCA1 Used Dan's GC3.1 N96 ORCA025, u-ak896, and some options from u-ak775
u-al088UM10.7, NEMO3.6 N96-ORCA1 Used u-al035 but used more developed CICE_START file
u-al596UM10.7, NEMO3.6 N96-ORCA1 Used u-al088 but updating iodef.xml file and other changes from Tim Graham via Till. Over 1st 3 months: av time for 1 month is 1,706s (28:26) or 4.22 model yrs/day on 39 nodes.
u-am151UM10.7, NEMO3.6 N96-ORCA1 Used u-al596 but updating iodef.xml and moved to 3 month cycle and added in Maff's OpenMP branch for aerosol
UKESM0.5-CN
u-ai532UM10.6, NEMO3.6 N96-ORCA1 (17 tiles) Used u-ai195 and Andy Wiltshire's u-ah410 to add in 17 tiles, nitrogen limitation and land use. This mirrors Yongming's u-ai425 which is the official UKESM0.5 job. Also adds the drivers using Richard's u-ai524.
u-ai572UM10.6, NEMO3.6 N96-ORCA1 (27 tiles) Used u-ai532 and Robin's instructions (and his job u-af898) to add the extra 10 ice tiles
u-ai614UM10.6, NEMO3.6 N96-ORCA1 (27 tiles) Used u-ai572 and Julien's u-ai570
u-ai808UM10.6, NEMO3.6 N96-ORCA1 (27 tiles) Ported u-ai614 to XCS
u-ai898UM10.6, NEMO3.6 PI (N96-ORCA1) Used differences between Yongming's u-ai592 (pre-industrial, PD) and u-ai566 (present day, PD) to create PI version of u-ai808
u-aj053UM10.6, NEMO3.6 PI (N96-ORCA1) Used u-ai898 and moved to one month cycle and other small changes
u-aj206UM10.6, NEMO3.6 PI (N96-ORCA1) Used u-aj053 and added ice calving
u-aj062UM10.6, NEMO3.6 PD (N96-ORCA1) Used u-ai808 and moved to one month cylce, added ice calving and other changes
u-aj599UM10.6, NEMO3.6 PD (N96-ORCA1) Used u-aj062 and u-ai737, and tidied-up job to be more like GC3.1
u-al512UM10.6, NEMO3.6 PD (N96-ORCA1) Used u-aj599, but removed the need for manual stop by creating two reconfigurations
u-am957UM10.6, NEMO3.6 PD (N96-ORCA1) Upated u-aj599, although still using old land-sea mask and seem to have to keep the geothermal weights
u-an614UM10.6, NEMO3.6 PD (N96-ORCA1) Used u-an957 and taken the restartability code from Stephen's branch of u-an446 to add restartability tests
u-an993UM10.7, NEMO3.6 PD (N96-ORCA1) Used u-an614 and just run rose app-upgrade on apps um and fcm_make_um
UKESM0.5
u-ak081UM10.6, NEMO3.6 PD (N96-ORCA1) Upgrading Yongming's u-aj110
MEDUSA ocean only jobs
u-aj783NEMO3.6 Spin-up (ORCA1) Used Julien's u-aj287 (via u-aj369) and updated to much later GO package branch and XIOS2
u-ak288NEMO3.6 Spin-up (ORCA1) Taken Julien's u-aj946 and ported to XCS
u-ak298NEMO3.6 Spin-up (ORCA1) Used u-ak288 and split app
u-ak454NEMO3.6 Spin-up (ORCA1) Used u-ak298 and Julien's u-aj946, which now has split app and drivers to add drivers
u-ak506NEMO3.6 Spin-up (ORCA1) Used u-ak454 (via u-ak491) to make as fast as possible, but it does use Richard's version of GO6 package branch
u-ak784NEMO3.6 Spin-up (ORCA1) Used u-ak506 and update it to be more like u-aj599.
u-an334NEMO3.6 Spin-up (ORCA1) I used Stephen's Haddad's u-am235, which has restartability tests in, and my u-ak784 to create u-am788. Stephen created a branch in this to fix it and then I've copied this and added in tests for the passive tracers to create this job
u-an474NEMO3.6 Spin-up (ORCA1) Used u-an334 and added in a PE decomposition change/test
u-an699NEMO3.6 Spin-up (ORCA1) Used u-an474 and added in a KGO test
u-an912NEMO3.6 Spin-up (ORCA1) Used u-an699 and added in Richard's all-in-one NEMO branch
MEDUSA + GC3.1 N96/ORCA1
u-ak109UM10.6, NEMO3.6 Spin-up (ORCA1) + ATMOS Updates to Julien's u-aj784
u-al312UM10.7, NEMO3.6 Spin-up (ORCA1) + ATMOS Used u-ak109. Note that this doesn't include the new land-sea mask, because it's starting from an old CICE_START file and that's unlikely to work with the new land-sea mask.
u-am254UM10.7, NEMO3.6 Spin-up (ORCA1) + ATMOS Used u-al312. Detached XIOS, more cores for ocean and 3 month cycle. It's still using the old land-sea mask.
u-am276UM10.7, NEMO3.6 Spin-up (ORCA1) + ATMOS Used u-am254. Moved to new land-sea mask.
u-am300UM10.7, NEMO3.6 Spin-up (ORCA1) + ATMOS Used u-am276. Added in Maff's OpenMP branch.
u-am354UM10.7, NEMO3.6 Spin-up (ORCA1) + ATMOS Used u-am300 but removed groupMEDUSA_cmip6.
u-am375UM10.7, NEMO3.6 Spin-up (ORCA1) + ATMOS Same as u-am354 but 3 OpenMP threads.
u-an809UM10.7, NEMO3.6 Spin-up (ORCA1) + ATMOS Same as u-am354 but I've added restartability tests.
u-an955UM10.7, NEMO3.6 Spin-up (ORCA1) + ATMOS Same as u-an809 but I've added PE decomposition test and KGO test.
UKESM0.6-CN
u-ao131UM10.7, NEMO3.6 N96-ORCA1 (17 tiles) Fixed the ocean in Yongming's u-an702
u-ao203UM10.7, NEMO3.6 N96-ORCA1 (17 tiles) Alastair has added diagnostics to u-ao131 to create u-ao176 and I'm added suite tests from u-an955 to this
UKESM0.7-CN
u-ao582UM10.7, NEMO3.6 N96-ORCA1 (17 tiles) I've coped Alistair's u-ao365 and added some updates which are on page for u-ao365
u-ao681UM10.8, NEMO3.6 N96-ORCA1 (17 tiles) Upgraded u-ao582 to UM10.8
u-ao698UM10.8, NEMO3.6 N96-ORCA1 (17 tiles) Exact copy of u-ao681 to run on ukesm account
u-ap213UM10.7, NEMO3.6 N96-ORCA1 (17 tiles) Exact copy of Richard's u-ao967 (~frrh/roses/u-ao967working) which seems to be the only configuration which can run from old land-sea mask to new faulty land-sea mask
UKESM0.8-CN
u-ap240UM10.7, NEMO3.6 N96-ORCA1 (17 tiles) A copy of UKESM0.8-CN, u-ao837, but altered to use new faulty land-sea mask and have the same item arguments as u-ap213. However, like most runs, it will crash with Deep conv or Mid conv errors if try to run from u-am008 (UKESM0.6-CN) dumps on old land-sea mask. However, you can run from 2 year dumps from u-ap213.
u-ap263UM10.7, NEMO3.6 N96-ORCA025 (17 tiles) Modifying u-ap240 to use ORCA025
u-ap375UM10.7, NEMO3.6 N216-ORCA025 (17 tiles) Modifying u-ap263 to use N216
u-ap861UM10.7, NEMO3.6 N216-ORCA025 (17 tiles) Modifying u-ap375, via my u-ap826, but improved which stash items are enabled
u-aq024UM10.7, NEMO3.6 N216-ORCA025 (17 tiles) Modifying u-ap861 to use opt/rose-app-n216e_orca025.conf files, central location for MEDUSA files, ...
UKESM0.9.2-CN
u-as259UM10.7 N96 (17 tiles) Atmosphere only version of UKESM0.9.2-CN PI, u-ar783.
u-as299UM10.7 N216 (17 tiles) Using u-as259 to create an atmosphere only version of UKESM0.9.2-CN PI at N216 and using nearest neighbour technique (h_int_method=3).
UKESM0.9.3-CN
u-as273UM10.7, NEMO3.6 N216-ORCA025 (17 tiles) Altering resolution of UKESM0.9.2-CN PI, u-ar783, to N216-ORCA025. Using the opt/rose-app-n216e_orca025.conf files from u-aq024. And upgrading from UKESM0.9.2-CN to UKESM0.9.3-CN
u-at599UM10.7, NEMO3.6 N216-ORCA025 (17 tiles) Used u-as273 and Jeremy's u-as911 to port to NEXCS
UKESM0.9.3
u-at936UM10.9, NEMO3.6 N216-ORCA025 (17 tiles) Created a testing suite by using Alistair's UKESM0.9.3, u-at643, and my u-ar799 & u-ap727 -> u-at079 -> u-at519
u-at996UM10.9, NEMO3.6 N216-ORCA025 (17 tiles) Used u-at936, and added in OpenMP test to test suite
u-au117UM10.9, NEMO3.6 N216-ORCA025 (17 tiles) Used u-at996, and added in Maff's optimisations to test suite