To me, it looks like Julien has removed all the Biogeochemistry fields from the GO6 package version of this file to create his version, field_def_dyn.xml, and moved them into field_def_bgc.xml.
I'd like to use the GO6 package version of field_def.xml and only have the extra fields needed in field_def_bgc.xml. To this end I've created /home/h06/mstringe/fcm/medusa/xios/field_def_bgc.xml.
I need to change code, so we have
〈field_definition src="./field_def_bgc.xml"/〉 〈field_definition src="./field_def.xml"/〉
and add
〈file id="file11" name_suffix="_ptrc_T" description="Medusa sms variables" 〉 〈field_group group_ref="groupMEDUSA" /〉 〈field_group group_ref="groupIDTRA" /〉 〈field_group group_ref="groupCFC" /〉 〈field_group group_ref="groupAGE" /〉 〈/file〉 〈file id="file12" name_suffix="_diad_T" description="Medusa diagnostic variables" 〉 〈field_group group_ref="groupMEDUSA_dia" /〉 〈field_group group_ref="groupMEDUSA_3dd" /〉 〈field_group group_ref="groupMEDUSA_dms" /〉 〈field_group group_ref="groupIDTRA_dia" /〉 〈field_group group_ref="groupCFC_dia" /〉 〈field_group group_ref="groupMEDUSA_cmip6" /〉 〈/file〉
just before the line `〈/file_group〉', where the file numbers should follow on from the previous file number.